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Research Publications of former and current IDK members

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Joanna Andrecka

J. Michaelis, A. Muschielok, J. Andrecka, W. Kügel, J. Moffitt:
"DNA based molecular motors"
Physics of Life Reviews 6, 250-266 (2009)

J. Andrecka, B. Treutlein, M. Izquierdo Arcusa, A. Muschielok, R. Lewis, A. Cheung, P. Cramer and J. Michaelis:
"Nano positioning system reveals the course of upstream and nontemplate DNA within the RNA polymerase II elongation complex"
Nucleic Acids Research, 37, 5803-5809 (2009)

J. Andrecka, R. Lewis, F. Brueckner, E. Lehmann, P. Cramer, J. Michaelis:
"Single-molecule tracking of mRNA exiting from RNA polymerase II"
PNAS, 105, 135-140 (2008)

A. Muschielok, J. Andrecka, A. Jawhari, F. Brückner, P. Cramer and J. Michaelis
"A nano-positioning system for macromolecular structural analysis"
Nature Methods 5, 965- 971 (2008)

M. Dziedzicka-Wasylewska, A. Faron-Gorecka, J. Andrecka, A. Polit, M. Kusmider, Z.  Wasylewski:
"Fluorescence studies reveal heterodimerization of dopamine d(1) and d(2) receptors in the plasma membrane"
Biochemistry, 45 (29) : 8751-9 (2006)

Johannes Bayer

A. Hohner, J. Bayer and J. O. Rädler:
Wormlike lipid/DNA micelles in a non-polar solvent
Eur. Phys. J. E, 21 (1), 41-48 (2006).

J. Bayer, J.O. Rädler, R. Blossey:
Chains, Dimers and Sandwiches: Melting Behaviour of DNA Nanoassemblies
Nano Letters, 5 (3), 497-501, (2005).

M. Abdalla, J. Bayer, J. Rädler, K. Müllen:
Nanoparticles and DNA probes based on DNA-fluorophore conjugates, Nucleosides Nucleotides & Nucleic Acids 22 (5-8): 1399-1401 (2003).

M. Lakadamyali, R. Mahaffy, B. Furnish, J. Bayer, F. Mackintosh, C. Shih, C. Schmidt, J. Kas:
Viscoelastic and active response of neuronal growth cones to mechanical stimuli by AFM
Biophys. J. (Annual Meeting Abstracts) (2001).

 

Klaus Becker

K. Becker, A. L. Rogach, J. Feldmann, D. V. Talapin, J. M. Lupton:
Energetic disorder limits energy transfer in semiconductor nanocrystal-DNA-dye conjugates
Appl. Phys. Lett., 95, 14, 143101 (2009).

C. Mauser, T. Limmer, E. Da Como, K. Becker, A. L. Rogach, J. Feldmann, D. V. Talapin:
Anisotropic optical emission of single CdSe/CdS tetrapod heterostructures: Evidence for a wavefunction symmetry breaking
Phys. Rev. B 77, 153303 (2008).

K. Becker, M. Fritzsche, S. Höger, J. M. Lupton:
Phenylene-Ethynylene Macrocycles as Model Systems of Interchromophoric Interactions in Pi-Conjugated Macromolecules
J. Phys. Chem. B., 112, 4849 (2008).

E. Da Como, K. Becker, J. M. Lupton:
Single Molecule Spectroscopy of Polyfluorenes
in "Advances in polymer science", Edited by U. Scherf and D. Neher, Springer Berlin / Heidelberg 2008, ISSN 0065-3195.

E. Da Como, K. Becker, J. Feldmann, J. M. Lupton:
How strain controls electronic linewidth in single beta-phase polyfluorene nanowires
Nano Lett. 7 (10): 2993-2998  (2007).

K. Becker, E. Da Como, J. Feldmann, F. Scheliga, E. Thorn Csányi, J. M. Lupton:
How chromophore shape controls photophysical function in phenylene-vinylenes, submitted.

E. Da Como, K. Becker, J. Feldmann, J. M. Lupton:
Long-range intrachain order limits electronic dephasing in polymeric nanowires, submitted.

D. Soujon, K. Becker, A. L. Rogach, J. Feldmann, H. Weller, D. V. Talapin, J. M. Lupton:
Time resolved Förster energy transfer from individual semiconductor nanoantennae to single dye molecules
J. Phys. Chem. C (Letter), 111, 11511 (2007).

K. Becker, P. G. Lagoudakis, G. Gaefke, S. Höger and J. M. Lupton:
Exciton accumulation in pi-conjugated wires encapsulated by light-harvesting macrocycles
Angew. Chem. Int. Ed. 46, 3450-3455 (2007).

M. J. Walter, J. M. Lupton, K. Becker, J.Feldmann, G. Gaefke, S. Höger:
Simultaneous Raman and fluorescence spectroscopy of single conjugated polymer chains
Phys. Rev. Lett. 2007, 98, 137401 (2007).

K. Becker, J. M. Lupton, and J. Feldmann:
Photosynthese in neuem Licht, Physik in unserer Zeit, 38, 7-8 (2007).

K. Becker, J. M. Lupton, J. Müller, A. L. Rogach, D. V. Talapin, H. Weller, and J. Feldmann:
Electrical control of Förster energy transfer
Nature Mat. 5, 777 (2006).

K. Becker, J. M. Lupton, J. Feldmann, S. Setayesh, A. C. Grimsdale, K. Müllen:
Efficient Intramolecular Energy Transfer in Single Endcapped Conjugated, Polymer Molecules in the Absence of Appreciable Spectral Overlap
J. Am. Chem. Soc. (Comm.), 128, 680 (2006).

K. Becker and J. M. Lupton:
Efficient Light Harvesting in Dye-endcapped Conjugated Polymers Probed by Single Molecule Spectroscopy
J. Am. Chem. Soc. 128, 6468-6479 (2006).

K. Becker, J. M. Lupton, J. Feldmann, B. S. Nehls, F. Galbrecht, D. Q. Gao, and U. Scherf:
On-chain fluorenone defect emission from single polyfluorene molecules in the Absence of Intermolecular Interactions
Adv. Funct. Mater. 16, 364 (2006).

T. Gensty, K. Becker, I. Fischer, W. Elsässer, C. Degen, P. Debernadi, G. P. Bava:
Wave-Chaos in Real-World Surface-Emitting-Vertical-Cavity-Lasers
Phys. Rev. Lett. 94, 233901 (2005).

K. Becker and J. M. Lupton:
Dual species emission from single polyfluorene molecules: signatures of stress-induced planarization of single polymer chains
J. Am. Chem. Soc. (Comm.) 127, 7306 (2005).

K. Becker, I. Fischer, W. Elsässer:
Spatio-Temporal Emission Dynamics of VCSELs: Modal Competition in the Turn-on Behavior Semiconductor Lasers and Laser Dynamics, D. Lenstra, G. Morthier, T. Erneux, M. Pessa (eds.)
Proceedings of SPIE, Vol 5452, pp. 452 (2004).

Julia Blechinger

J. Blechinger, R. Herrmann, D. Kiener, F. J. García-García, C. Scheu, A. Reller, C. Bräuchle:
"Perylene-Labeled Silica Nanoparticles: Synthesis and Characterization of Three Novel
Silica Nanoparticle Species for Live-Cell Imaging"
first published online: 27 SEP 2010 small 2010

T. Lebold, L.A. Mühlstein, J. Blechinger, M. Riederer, H. Amenitsch, R. Köhn, K. Peneva, K. Müllen, J. Michaelis, C. Bräuchle, and T. Bein:
"Tuning single-molecule dynamics in functionalized mesoporous silica"
Chem. Eur. J. 15, 1661-167 (2009)

F. Westerlund, P. Nordell, J. Blechinger, T.M. Santos, B. Norden, and P. Lincoln:
"Complex DNA binding kinetics resolved-by combined circular dichroism and luminescence analysis"
Journal of Physical Chemistry B, 112(21): p. 6688-6694 (2008)

Ondrej Burkacky

O. Burkacky, A. Zumbusch, C. Brackmann, et al. :
Dual-pump coherent anti-Stokes-Raman scattering microscopy
Optics Letters 31 (24): 3656-3658 Dec 15 2006.

A. Zumbusch, O. Burkacky:
Chemical selectivity without staining: CARS microscopy
Nachrichten aus der Chemie 54 (1): 38-41 Jan 2006.

C. Krinninger, C. Hoegg, H. Noeth, J. C. Gálvez-Ruiz, O. Mayer, O. Burkacky, A. Zumbusch, I. P. Lorenz:
Dichroic, dinuclear 2-(2-NO)-nitrosoaniline -bridged complexes of rhenium of the type [{(CO3)Re(X)}2ONC6H4NR2] (X=Cl, Br, I; R=Me, Et)
Chemistry-A European Journal 11(24), 7228-7236, 2005.

Gerke Damsma

G.E. Damsma, and P. Cramer:
Molecular basis of transcriptional mutagenesis at 8-oxoguanine.
J. Biol. Chem., Epub Sep 16

J.F. Sydow, F. Brueckner, A.C.M. Cheung, G.E. Damsma, S. Dengl, E.
Lehmann, D. Vassylyev, and P. Cramer:

Structural Basis of Transcription: Mismatch-Specific Fidelity Mechanisms
and Paused RNA Polymerase II with Frayed RNA.
Molecular Cell 34, 710-721 (2009)

F. Brueckner, K.J. Armache, A. Cheung, G.E. Damsma, H. Kettenberger, E.
Lehmann, J. Sydow, and P. Cramer:

Structure–function studies of the RNA polymerase II elongation complex.
Acta Cryst. D65, 112-120 (2009)

P. Cramer, K.J. Armache, S. Baumli, S. Benkert, F. Brueckner, C. Buchen, G.E. Damsma, S. Dengl, S.R. Geiger, A.J. Jasiak, A. Jawhari, S. Jennebach, T. Kamenski, H. Kettenberger, C.-D. Kuhn, E. Lehmann, K. Leike, J.F. Sydow, and A. Vannini:
Structure of Eukaryotic RNA Polymerases.
Annu. Rev. Biophys. 37, 337-352 (2008).

G. E. Damsma, A. Alt, F. Brueckner, T. Carell and P. Cramer
Mechanism of transcriptional stalling at cisplatin-damaged DNA
Nat. Struct. Mol. Biol. 14, 1127-33 (2007)

 

Melari Davies

M. Davies, C.  Jung, P. Wallis, T. Schnitzler, C. Li, K. Müllen and C. Bräuchle*:
"Photophysics of New Photostable Rylene Derivatives: Applications in Single Molecule Studies and Membrane Labelling"
ChemPhysChem published online (2010)

M. Davies, S. Goette, P. Klüfers* and T. Schwarz:
"Methyl 4,6-O-benzylidene-2,3-dideoxy-3-hydroxyimino-a-D-erythro-pyranoside methanol solvate"
Acta Crystallographica E63, o4765 (2007)

Hendrik Dietz

An updated list of publications can be found here...

Publications until 2007:
T. Liedl, H. Dietz, B. Yurke, F. Simmel:
Controlled Trapping and Release of Quantum Dots in a DNA-Switchable Hydrogel
Small 3, 1688 (2007)

H. Dietz and M. Rief:
A minimal model of protein mechanics, under review, Physical Review Letters.

H. Dietz and M. Rief:
Detecting molecular fingerprints in single molecule force spectroscopy using pattern recognition
accepted, JJAP.

H. Dietz, T. Bornschlögl, R. Heym, F. König, and M. Rief:
Programming protein self-assembly with coiled coils, submitted to NJP.

H. Dietz, F. Berkemeier, M. Bertz, and M. Rief:
Anisotropic deformation response of single protein molecules
Proc Natl Acad Sci vol 103, p12724 (2006).

H. Dietz and M. Rief:
Protein structure by mechanical triangulation
Proc Natl Acad Sci vol 103, p1244 (2006).

H. Dietz, M. Bertz, M. Schlierf, F. Berkemeier, T. Bornschlögl, J. Junker, and M. Rief:
Cysteine Engineering of polyproteins for single molecule force spectroscopy
Nature Protocols vol 1, p80 (2006). 

M. Rief and H. Dietz:
Single molecule force spectroscopy of proteins
contributed to “Soft condensed matter physics in Molecular and Cell biology”, ISBN 0-7503-1023-5 (2006).

S. Kufer, H. Dietz, C. Albrecht, K. Blank, A. Kardinal, M. Rief and H. Gaub:
Covalent immobilization of recombinant fusion proteins with hAGT for single molecule force spectroscopy
Eur Biophys J vol 35, p72 (2005).

H. Dietz and M. Rief:
Exploring the energy landscape of Green Fluorescent Protein by single-molecule mechanical experiments
Proc Natl Acad Sci vol 101, p16192 (2004).

Ricky Dunbar

J. Weickert, R. B. Dunbar, H. C. Hesse, W. Wiedemann, L. Schmidt-Mende:
"Nanostructured organic and hybrid solar cells"
Adv. Mater. (2011), Article first published online: 15 FEB 2011
DOI: 10.1002/adma.201003991

Hanna Engelke

V. Cauda, H. Engelke, A. Sauer, D. Arcizet, C. Bräuchle, J. Rädler and T. Bein:
„Colchicine-loaded lipid bilayer-coated 50 nm mesoporous nanoparticles efficiently induce microtubule depolymerization upon cell uptake“
Nano Letters 2010, 10, S. 2484-2492 (2010).

H. Engelke, I. Dorn and J.O. Rädler:
"Diffusion and molecular binding in crowded vesicle solutions measured by Fluorescence Correlation Spectroscopy"

Soft Matter, 5, 4283 (2009)

E. Lang, R. Hildner, H. Engelke, P. Osswald, F. Würthner and J. Köhler:
"Comparison of the Photophysical Parameters for Three Perylene Bisimide Derivatives by Single-Molecule Spectroscopy"
ChemPhysChem 8, 1487 – 149 (2007)

Leila Esmaeili Sereshki

M. Neek-Amal, G. Tayebirad, M. Molayem, M. E. Foulaadvand, L. Esmaeili Sereshki, A. Namiranian:
“Ground state study of simple atoms within a nano-scale box”
Solid State Communications, 145, 594 (2008)

Katja Falter

D. Ho, K. Falter, P. Severin, H. E. Gaub:
"DNA as a force sensor in an aptamer-based biochip for adenosine"
Anal. Chem., 81 (8), pp 3159–3164 (2009)

D. Ho, C. Dose, C. H. Albrecht, P. Severin, K. Falter, P. B. Dervan, H. E. Gaub:
“Quantitative detection of small molecule/DNA complexes employing a force-based and label-free DNA-microarray”
Biophys J. 2009 Jun 3;96(11):4661-71 (2009)

D. Ho, J. L. Zimmermann, F. A. Dehmelt, U. Steinbach, M. Erdmann, P. Severin, K. Falter, H. E. Gaub:
"Force-driven separation of short double stranded DNA"
Biophysical Journal. 97:3158-3167 (2009)

Florian Feil

S. Wirth, A. U. Wallek, A. Zernickel, F. Feil, M. Sztiller-Sikorska, K. Lesiak, C. Bräuchle, I.-P.Lorenz, M. Czyz:
"Tautomerization of 2-nitroso-N-arylanilines by coordination as N,N'-chelate ligands to rhenium(I) complexes and the anticancer activity of newly synthesized oximine rhenium(I) complexes against human melanoma and leukemia cells in vitro"
Journal of Inorganic Biochemistry 104, 774 (2010)

F. Feil, C. Jung, J. Kirstein, J. Michaelis, C. Li, F. Nolde, K. Müllen and C. Bräuchle:
“Diffusional and orientational dynamics of various single terrylene diimide conjugates in mesoporous materials”
Microporous and Mesoporous Materials Volume 125, Issues 1-2, 70-78 (2009)

Carina Frauer

A. Kirchhofer, J. Helma, K. Schmidthals, C. Frauer, S. Cui, A. Karcher, M. Pellis, S. Muyldermans, C. S. Casas-Delucchi, M. C. Cardoso, H. Leonhardt, KP Hopfner, U. Rothbauer:
Modulation of protein properties in living cells using nanobodies

NATURE STRUCTURAL & MOLECULAR BIOLOGY 17 (1): 133-U162 (2010)

A. Ambrogelly, S. Gundllapalli, S. Herring, C. Polycarpo, C. Frauer and D. Söll
Pyrrolysine is not hardwired for cotranslational insertion at UAG codons
PNAS 104(9): 3141-46 (2007).

M. Hengesbach, A. Kobitski, F. Voigts-Hoffmann, C. Frauer, G.U. Nienhaus and M. Helm
RNA intramolecular dynamics by single-molecule FRET.
Curr Protoc Nucleic Acid Chem Chapter 11: Unit 11.12

Cheng Guo

C. Guo, A. Weichselbaum, J. von Delft, M. Vojta
"Critical and strong-coupling phases in one- and two-bath spin-boson models"
arXiv:1110.6314, submitted October 28, 2011

C. Guo, A. Weichselbaum, S. Kehrein, T. Xiang, and J. v. Delft:
"Density matrix renormalization group study of a quantum impurity model with Landau-Zener time-dependent Hamiltonian"
Phys. Rev. B 79, 115137 (2009)

C. Guo:
Thermodynamic Analysis of Solar Sails.
College Physics, Vol 24, 62 (2005)

Gregor Heiss

M. S. Singleton, G. Heiss, A. Hübler:
"Optimization of ramified absorber networks doing desalination"
Phys. Rev. E 83, 016308 (2011)
Received 3 March 2010; revised 12 September 2010; published 28 January 2011

M. Singleton, G. Heiss, A. Hubler:
"The Optimal Shape of Roots"
COMPLEXITY, Vol. 15, 9-11, DOI: 10.1002/cplx.20312 (2010)

D.M. Togashi, A. G. Ryder, G. Heiss:
"Quantifying adsorbed protein on surfaces using confocal fluorescence microscopy"
Colloids and Surfaces B: Biointerfaces, DOI:10.1016/j.colsurfb.2009.04.007 (2009)

G. Heiss, V. Lapiene, F. Kukolka, C.M. Niemeyer, C. Bräuchle, D.C. Lamb:
"Single-Molecule Investigations of a Photoswitchable Nanodevice"
Small 5 (10) 1169-75 (2009)

P. Schluesche, G. Heiss, M. Meisterernst, D. C. Lamb:
"Dynamics of TBP binding to the TATA box"
Proceedings of the SPIE, DOI: 10.1117/12.769177 (2008)

O. Holub, M. J. Seufferheld, C. Gohlke, Govndjee, G. J. Heiss and R. M. Clegg:
"Fluorescence Lifetime Imaging Microscopy of Chlamydomonas reinhardtii: 'non-photochemical quenching mutants and the effect of photosynthetic inhibitors on the slow chlorophyll fluorescence transient'"
Journal of Microscopy, Vol. 226, 90–120, (2007)

D. E. Chandler, Z. K. Majumdar, G. J. Heiss:
"Ruby Crystal for Demonstrating Time- and Frequency-Domain Methods of Fluorescence Lifetime Measurements"
Journal of Fluorescence, Vol. 16, 793-807, (2006)

Stephan Heucke

G. Acuna, S. F. Heucke, F. Kuchler, H. T. Chen, A. J. Taylor, and R. Kersting:
"Surface Plasmons in Terahertz Metamaterials"
Optics Express, Vol. 16, Issue 23, pp. 18745-18751 (2008)

Martin Höfling

M. Hoefling, Susanna Monti, Stefano Corni, K. E. Gottschalk:
“Interaction of β-Sheet Folds with a Gold Surface”
PLoS ONE 6(6): e20925. doi:10.1371/journal.pone.0020925 (2011)

M. Hoefling, N. Lima, D. Haenni, C. A. M. Seidel, B. Schuler, H. Grubmüller:
"Structural Heterogeneity and Quantitative FRET Efficiency Distributions of Polyprolines through a Hybrid Atomistic Simulation and Monte Carlo Approach"
PLoS ONE 6(5): e19791. doi:10.1371/journal.pone.0019791 (2011)

O. Cohavi, S. Corni, F. D. Rienzo, R. D. Felice, K. E. Gottschalk, M. Hoefling, D. Kokh, E. Molinari, G. Schreiber, A. Vaskevich, R. C. Wade:
"Protein-surface interactions: challenging experiments and computations"
J Mol Recognit, Vol. 23, pp. 259-262 (2010)

M. Hoefling and K. E. Gottschalk:
"Barnase-Barstar: From first encounter to final complex"
Journal of Structural Biology, Volume 171, Issue 1, p. 52-63 (2010)

M. Hoefling, F. Iori, S. Corni, and K. E. Gottschalk:

"Interaction of amino acids with the Au(111) surface: adsorption free energies from molecular dynamics simulations"
Langmuir, Vol. 26, pp. 8347-8351(2010)

M. Hoefling, F. Iori, S. Corni, and K. E. Gottschalk:
"The conformations of amino acids on a gold (111) surface"
Chemphyschem, Vol. 11, pp. 1763-1767 (2010)

D. B. Kokh, S. Corni, P. J. Winn, M. Hoefling, K. E. Gottschalk and R. C. Wade:
"ProMetCS: An Atomistic Force Field for Modeling Protein - Metal Surface Interactions in a Continuum Aqueous Solvent"
Journal of Chemical Theory and Computation, Vol. 6, pp. 1753-1768 (2010)

M. G. Wolf, M. Hoefling, C. Aponte-Santamaría, H. Grubmüller and G. Groenhof:
"g_membed: Efficient insertion of a membrane protein into an equilibrated lipid bilayer with minimal perturbation"
J Comput Chem, Vol. 31, pp. 2169-2174 (2010)

M. Hoefling, H. Kessler, K. E. Gottschalk:
"The transmembrane structure of integrin alphaIIbbeta3: significance for signal transduction"
Angew Chem Int Ed Engl, Vol. 48, pp. 6590-6593 (2009)

Ben Klünder

B. Klünder and A. Pelster:
"Systematic semiclassical expansion for harmonically trapped ideal Bose gases"
Eur. Phys. J. B 68, 457-465 (2009)

B. Klünder, A. Pelster, and R. Graham:
“Critical Temperature of Dirty Bosons”
Proceedings of the 9th International Conference: Path Integrals -- New Trends and Perspectives, World Scientific, 421 (2008)

Ilka Kriegel

M. Hallermann, I. Kriegel, E. Da Como, J. M. Berger, E. von Hauff, J. Feldmann:
"Charge transfer excitons in polymer/fullerene blends: the role of morphology and chain conformation"
Adv. Funct. Mater. 19, 3662-3668 (2009)

Jan-Timm Kuhr

G. Schwake, S. Youssef, J.-T. Kuhr, S. Gude, M. P. David, E. Mendoza, E. Frey, J. O. Rädler:
"Predictive Modeling of non-viral Gene Transfer"
Biotechnol. Bioeng. 105: 805-813 (2010)

M. Leisner, J.-T. Kuhr, J. O. Rädler, E. Frey, B. Maier
:
"Kinetics of Genetic Switching into the State of Bacterial Competence"
Biophysical Journal, Vol. 96, 3 (2009)

Frauke König

H. Dietz, T. Bornschlögl, R. Heym, F. König, and M. Rief:
"Programming protein self-assembly with coiled coils"
New J Phys Vol 9, p424 (2007)

Michael Lidschreiber

A. Mayer, M. Lidschreiber, M. Siebert, K. Leike, J. Söding, P. Cramer:
"Uniform transitions of the general RNA polymerase II transcription complex."
Nature Struct. Mol. Biol. 17, 1272-1278 (2010)

Elisangela Moura Linares

E. M. Linares, M. M. Rippel, F. Galembeck:
"Clay platelet partition within polymer latex blend films: an EFTEM study"
ACS Appl. Mater. Interfaces, 2 (12), pp 3648–3653 (2010)

E. M. Linares, L. F. Valadares, C. A. Silva, C. A. Rezende, F. Galembeck:
"Molecular mapping by low-loss-energy EFTEM imaging"
Analytical Chemistry 81, 2317 (2009)

L. F. Valadares, E. M. Linares, F. C. Braganca, F. Galembeck:
"Electrostatic adhesion of nanosized particles: the cohesive role of water"
Journal of Physical Chemistry C, 112, 8534 (2008)

E. M. Linares, L. P. Trombeta, A. B. Moreira, P. Sotomayor, L. T. Kubota:
"A fluorescence spot test for salicylate determination"
Analytical Letters, 40, 573. (2007)

Christof Mast

F. M. Weinert, C. B. Mast, and Dieter Braun:
"Optical fluid and biomolecule transport with thermal fields"
PCCP accepted (2011, doi 10.1039/C0CP02359K)

C. B. Mast, D. Braun:
"Thermal Trap for DNA Replication"
Phys. Rev. Lett. 104, 188102 (2010)

C. B. Mast,  N. Osterman, and D. Braun:
"Disequilibrium First: The Origin of Life"
Journal of Cosmology, 2010, Vol 10, 3305-3314

Judith Megerle

J. A. Megerle, G. Fritz, U. Gerland, K. Jung, J. O. Rädler:
"Timing and dynamics of single cell gene expression in the arabinose utilization system"
Biophys J 95, p. 2103-2115 (2008)

(under my maiden name Judith Leierseder:)
M. B. Hochrein, J. A. Leierseder, L. Golubovic, J. O. Rädler:
"DNA molecules on periodically microstructured lipid membranes: localization and coil stretching"
Phys. Rev. Lett. E 75, 021901 (2007)

M. B. Hochrein, J. A. Leierseder, L. Golubovic, J. O. Rädler
"DNA localization and stretching on periodically microstructured lipid membranes"
Phys. Rev. Lett. 96, 038103 (2006)

Brendan Osberg

K. Brewer, B. Osberg, S. Beyea, R. D'Arcy, G. Stroink:
"Is 4.0 Tesla MRI Advantageous for Current Source Localization of Weak Magnetic Fields?"
ICS 1300 (Biomagnetism), (2007)

B. Osberg:
"For your first born child: an ethical defence of the exploitation argument against commercial surrogacy."
penn journal of bioethics (2006)

Lidiya Osinkina

L. Osinkina, M. Markström, O. Orwar, A. Jesorka:
“A Method for Heat Stimulated Compression of (poly(N-isopropylacrylamide) Hydrogel Inside Giant Unilamellar Vesicles”
Langmuir, Vol. 26, No. 1, p. 1-4 (2010)

J. Baran, L. Dolgov, T. Gavrilko, L. Osinkina, G. Puchkovska, H. Ratajczak, Y. Shaydyuk, A. Hauser:
”Effect of clay surface modification on the structure and electro-optical properties of liquid crystal/clay nanocomposites”
Philosophical Magazine, Vol. 87, No. 28, p. 4273–4285 (2007)

Ida Pavlichenko

O. V. Novozhilov, I. V. Pavlichenko, N. V. Demchenko, A. I. Buzin, N. G. Vasilenko, A. M. Muzafarov:
"Multiarm Polydimethylsiloxane Stars Based on High Generation Dendrimers"
Russian Chemical Bulletin, 2010, 10

M. A. Obrezkova, A. A. Bychkova, N. G. Vasilenko, I. V. Pavlichenko, O. V. Novozhilov, M. I. Buzin, A. M. Muzafarov:
"Polymethylsiloxanes of different molecular architecture. Synthesis and structure-properties relationship study"
Polymer Preprints. 2009

Christoph Ratzke

C. Ratzke, M. Mickler, B. Hellenkamp, J. Buchner and T. Hugel:
"Dynamics of heat shock protein 90 C-terminal dimerization is an important part of its conformational cycle"
PNAS, Online Early Edition in the week of August 23, 2010

M. Mickler, M. Hessling, C. Ratzke, J. Buchner & T. Hugel:
"The large conformational changes of Hsp90 are only weakly coupled to ATP hydrolysis"
Nature Structural & Molecular Biology 16, 281 - 286 (2009)

Carsten Rohr

C. Rohr, M. Balbás Gambra, K. Gruber, C. Höhl, M. S. Malarek, L. Scherer, E. C. Constable, T. Franosch, B.A. Hermann:
"Predicting the influence of a p2-symmetric substrate on molecular self-organization with an interaction-site model"
Chem. Commun. 47, 1800-1802 (2011)

B. A. Hermann, C. Rohr, M. Balbás Gambra, A. Malecki, M. S. Malarek, E. Frey, and T. Franosch:
"Molecular self-organization: Predicting the pattern diversity and lowest energy state of competing ordering motifs"
Phys. Rev. B 82, 165451 (2010)

C. Rohr, M. Balbás Gambra, K. Gruber, E. C. Constable, E. Frey, T. Franosch, and B. A. Hermann:
"Molecular Jigsaw: Pattern Diversity Encoded by Elementary Geometrical Features"
Nano Lett., 10 (3), pp 833-837 (2010)

C. Rohr, J.M. Büttner, F.A. Palitschka, N.D. Kushch, M.V. Kartsovnik, W. Biberacher, R. Gross and B.A. Hermann:
„Organic Superconductors Revisited“
Eur. Phys. J. B. 2009, 69, 167-171 (2009)

Anna Magdalena Sauer

A. M. Sauer, A. Schlossbauer, N. Ruthardt, V. Cauda, T. Bein, and C. Bräuchle:
"Role of Endosomal Escape for Disulfide-Based Drug Delivery from Colloidal Mesoporous Silica Evaluated by Live-Cell Imaging"
Nano Letters 10 (9), p. 3684–3691 (2010)

V. Cauda, H. Engelke, A. Sauer, D. Arcizet, C. Bräuchle, J. Rädler and T. Bein:
"Colchicine-loaded lipid bilayer-coated 50 nm mesoporous nanoparticles efficiently induce microtubule depolymerization upon cell uptake"
Nano Letters 10 (7), p. 2484-2492 (2010)

A. M. Sauer, K. G. de Bruin, N. Ruthardt, O. Mykhaylyk, C. Plank and C. Bräuchle:
"Dynamics of magnetic lipoplexes studied by single particle tracking in living cells"
Journal of Controlled Release 137(2) (2009)

R. Capone, F. G. Quiroz, P. Prangkio, I. Saluja, A. M. Sauer, M. R. Bautista, R. S. Turner, J. Yang, M. Mayer:
"Amyloid-beta-induced ion flux in artificial lipid bilayers and neuronal cells: resolving a controversy"
Neurotox Res. 16(1):1-13 (2009)

Nadine Schwierz

N. Schwierz and P. Nielaba:
"Colloidal systems in three-dimensional microchannels: Lattice control via channel width and external force"
Phys. Rev. E 82, 031401 (2010)

N. Schwierz, D. Horinek, and R. R. Netz:
"Reversed Anionic Hofmeister Series: The Interplay of Surface Charge and Surface Polarity"
Langmuir, 26, 7370 (2010)

W. Kunz (Editor), J. Dzubiella, M. Fyta, D. Horinek, I. Kalcher, R. R. Netz, N. Schwierz:

"Specific Ion Effects in Nature and Technology, Ion-Specificity: From Solvation Thermodynamics to Molecular Simulations and Back"
World Scientific Publishing (2009)

Farzad Sekhavati

J. Männik, F. Sekhavati, J. E. Keymer and C. Dekker:
“Bacteria in submicron channels and microvalves”,
Proc 14th International Conference on Miniaturized Systems for Chemistry and Life Sciences, Groningen, The Netherlands, 3-7 October 2010, p 1376-1378.

Philip Severin

D. Ho, K. Falter, P. Severin, H. E. Gaub:
"DNA as a force sensor in an aptamer-based biochip for adenosine"
Anal. Chem., 81 (8), pp 3159–3164 (2009)

D. Ho, J. L. Zimmermann, F. A. Dehmelt, U. Steinbach, M. Erdmann, P. Severin, K. Falter, H. E. Gaub:
"Force-driven separation of short double stranded DNA"
Biophysical Journal. 97:3158-3167 (2009)

D. Ho, C. Dose, C. H. Albrecht, P. Severin, K. Falter, P. B. Dervan, H. E. Gaub:
"Quantitative detection of small molecule/DNA complexes employing a force-based and label-free DNA-microarray"
Biophys J. 2009 Jun 3;96(11):4661-71 (2009)

Martin Sikor

K. Mapa, M. Sikor, V. Kudryavtsev, K. Waegemann, S. Kalinin, C. A.M. Seidel, W. Neupert, D. C. Lamb, D. Mokranjac:
"The Conformational Dynamics of the Mitochondrial Hsp70 Chaperone"
Molecular Cell, Band 38, S. 1-12. 9. April 2010; doi: 10.1016/j.molcel.2010.03.010

E. Bismuto, E. Di Maggio, S. Pleus, M. Sikor, C. Röcker, G. Ulrich Nienhaus, D. C. Lamb:
"Molecular dynamics simulation of the acidic compact state of apomyoglobin from yellowfin tuna"
Proteins 74 (2): 273-290 (2008), doi:10.1002/prot.22149

B. Griepernau, S. Leis, M. F. Schneider, M. Sikor, D. Steppich, R. Böckmann:
"Alkanols and membranes - a story of attraction"
Biochim. Biophys. Acta, 1768(11), 2899-2913 (2007)

Ingo Stein

I.H. Stein, C. Steinhauer, and P. Tinnefeld:
"Single-Molecule Four-Color FRET Visualizes Energy-Transfer Paths on DNAOrigami"
JACS, 133 (12), (incl. Cover Figure) (2011)

I.H. Stein*, V. Schüller*, P. Böhm, P. Tinnefeld, and Tim Liedl:
"Single-molecule FRET ruler based on rigid DNA origami blocks"
ChemPhysChem, accepted 2011, *equal contribution
Article first published online: 9 FEB 2011

J. Vogelsang, C. Steinhauer, C. Forthman, I. H. Stein, B. Person, T. Cordes,P. Tinnefeld:
"Make them Blink: Probes for Super-Resolution Microscopy"
ChemPhysChem 11:2475-2490 (2010)

B. Person, I. H. Stein, C. Steinhauer, J. Vogelsang and P. Tinnefeld:
"Correlated movement and bending of nucleic acid structures visualized by multicolor single-molecule spectroscopy"
ChemPhysChem, 10(9-10):1455-1460, (2009)

T. Cordes, I. H. Stein, C. Forthmann, C. Steinhauer, M. Walz, W. Summerer, B. Person, J. Vogelsang and P. Tinnefeld:
"Controlling the emission of organic dyes for high sensitivity and superresolution microscopy"
Proc SPIE, 7367:73671D, (2009)

Uta Steinbach

D. Ho, J. L. Zimmermann, F. A. Dehmelt, U. Steinbach, M. Erdmann, P. Severin, K. Falter, H. E. Gaub:
"Force-driven separation of short double stranded DNA"
Biophysical Journal. 97:3158-3167 (2009)

J. Morfill, J. Neumann, K. Blank, U. Steinbach, E. M. Puchner, K. E. Gottschalk, and H. E. Gaub.
"Force-based analysis of multidimensional energy landscapes: application of dynamic force spectroscopy and steered molecular dynamics simulations to an antibody fragment-peptide complex"
J Mol Biol 381(5):1253-1266 (2008)

Mai Sun

M. Sun, L. Lariviere, S. Dengl, A. Mayer, P. Cramer:
"A tandem SH2 domain in transcription elongation factor Spt6 binds the phosphorylated RNA polymerase II CTD"
JBC Papers in Press, October 6, 2010, DOI 10.1074/jbc.M110.144568

S. Dengl, A. Mayer, M. Sun, P. Cramer:
"Structure and in vivo requirement of the yeast Spt6 SH2 domain"
Journal of molecular biology 389(1): 211-225 (2009)

C. Yi-Hung, M. Sun, P. Knochel:
"LiCl-Mediated Preparation of Functionalized Benzylic Indium(III) Halides and Highly Chemoselective Palladium-Catalyzed Cross-Coupling in a Protic Cosolvent"
Angewandte Chemie International Edition 48(12): 2236-2239 (2009)

Johann Szeifert

Y. Liu, J. M. Szeifert, J. M. Feckl, B. Mandlmeier, J. Rathouský, O. Hayden, D. Fattakhova-Rohlfing, and T. Bein:
"Niobium Doped Titania Nanoparticles: Synthesis, Assembly into Mesoporous Films and Electrical Conductivity"
ACS Nano 4 (9), 5373 (2010)

J. M. Szeifert, J. M. Feckl, D. Fattakhova-Rohlfing, Y. Liu, V. Kalousek, J. Rathouský, and T. Bein:
"Ultrasmall titania nanocrystals and their direct assembly into mesoporous structures showing fast lithium insertion"
Journal of the American Chemical Society132, 12605 (2010)

H. Němec, P. Kužel, F. Kadlec, D. Fattakhova-Rohlfing, J. M. Szeifert, T. Bein, V. Kalousek, and J. Rathouský:
"Ultrafast terahertz photoconductivity in nanocrystalline mesoporous TiO2 films"
Applied Physics Letters 96 (6), 062103 (2010)

D. Fattakhova-Rohlfing, J. M. Szeifert, Q. Yu, V. Kalousek, J. Rathousky, and T. Bein:
"Low-temperature synthesis of mesoporous titania-silica films with pre-formed anatase nanocrystals"
Chemistry of Materials 21 (12), 2410-2417 (2009)

J. M. Szeifert, D. Fattakhova-Rohlfing, D. Georgiadou, V. Kalousek, J. Rathousky, D. Kuang, S. Wenger, S. M. Zakeeruddin, M. Grätzel and T. Bein:
"'Brick and mortar' strategy for the formation of highly crystalline mesoporous titania films from nanocrystalline building blocks"
Chemistry of Materials 21 (7), 1260-1265 (2009)

Barbara Treutlein

J. Andrecka, B. Treutlein, M. Izquierdo Arcusa, A. Muschielok, R. Lewis, A. Cheung, P. Cramer and J. Michaelis:
"Nano positioning system reveals the course of upstream and nontemplate DNA within the RNA polymerase II elongation complex"
Nucleic Acids Research, 37, 5803-5809 (2009)

J.A. Huffman, B. Treutlein, U. Pöschl:
"Fluorescent biological aerosol particle concentrations and size distributions measured with an ultraviolet aerodynamic particle sizer (UV-APS) in Central Europe"
Atmos. Chem. Phys. Discuss., 9, (2009)

S. Schuy, B. Treutlein, A. Pietuch and A. Janshoff:
"In situ synthesis of lipopeptides as versatile receptors for the specific binding of nanoparticles and liposomes to solid supported membranes"
Small 4 (7), 970 (2008)

Kulpreet Singh Virdi

A. Vetter, K. S. Virdi,S. Espenlaub,W. Rodl, E. Wagner, P. S. Holm, F. Kreppel, C. Scheu, C. Spitzweg, M. Ogris:
Chemical Modification of the Adenovirus Capsid for Enhanced Viral Uptake into Target Cells
HUMAN GENE THERAPY 21 (9): 1193-1193 SEP 2010

Christoph A. Weber

V. Schaller, C. A. Weber, E. Frey, A. Bausch:
"Polar Pattern Formation: Hydrodynamic coupling of driven filaments"
Soft Matter, Advance Online Publication (2011)

V. Schaller, C. A. Weber, C. Semmrich, E. Frey, A. R. Bausch:
"Polar patterns of driven filaments"
Nature 467, 73–77 (2010)

Jonas Weickert

J. Weickert, F. Auras, T. Bein, L. Schmidt-Mende:
"Characterization of Interfacial Modifiers for Hybrid Solar Cells"
J. Phys. Chem. C, in press (2011)

M. Al-Hussein, H.C. Hesse, J. Weickert, L. Dössel, X. Feng, K. Müllen, L. Schmidt-Mende:
"Structural  Properties of the Active Layer of Discotic Hexabenzocoronene/Perylene Diimide Bulk-hetero Junction Photovoltaic Devices"
The Role of Alkyl Side Chain Length, Thin Solid Films, in press (2011)

H.C. Hesse, J. Weickert, C. Hundschell, X. Feng, K. Müllen, B. Nickel, A. J. Mozer, L. Schmidt-Mende:
"Perylene sensitization of fullerenes for improved performance in organic photovoltaics"
Adv. Energ. Mater., DOI: 10.1002/aenm.201100211 (2011)

J. Weickert, R. B. Dunbar, H. C. Hesse, W. Wiedemann, L. Schmidt-Mende:
"Nanostructured organic and hybrid solar cells"
Adv. Mater. 23 (16) 1810-1828 (2011)
DOI: 10.1002/adma.201003991

J. Weickert, C. Palumbiny, M. Nedelcu, T. Bein, L. Schmidt-Mende:
"Controlled growth of TiO2 nanotubes on conducting glass"
Chem. Mater. 23 (2) (2011), 155-162

J. Weickert, H. Sun, C. Palumbiny, H. C. Hesse, L. Schmidt-Mende:
"Spray-deposited PEDOT:PSS for inverted organic solar cells"
Sol. Energ. Mat. Sol. Cells 94 2371 (2010)

H.C. Hesse, J. Weickert, M. Al-Hussein, L. Dössel, X. Feng, K. Müllen, L. Schmidt-Mende:
"Discotic materials for organic solar cells: influence of chemical structure on assembly and performance"
Sol. Energ. Mat. Sol. Cells 94 560 (2010)